Bioinformatics solutions

This section gives a short summary on the bioinformatics solutions, which we offer. The Bioinformatics Group 'Bioinformatics in Quantitative Biology' aka 'BIMSB Bioinformatics / Mathematical Modelling' strives to provide state-of-the-art solutions on a collaborative basis. If you are interested in our support, please contact Christoph Dieterich (christoph.dieterich at mdc-berlin dot de)

Sequencing data

We process data from all current next-generation sequencing platforms as well as traditional Sanger sequence data. Generally, data processing involves the removal of adaptor sequences and quality clipping. All subsequent analyses depend on the application and type of data.


Roche 454 sequencer	ABI SOLID sequencer	Illumina Solexa sequencer

Genomics / Genotyping

Sequence variation detection / Resequencing applications
de novo assembly
Copy number alterations
Genome rearrangement studies

Transcriptomics

Transcriptome assembly
small RNA analyses
Splice variant discovery

ChIP-Seq

Protein / DNA binding
Protein / RNA binding

Metagenomic / Population studies

Species enumeration

Mass spectrometry data

Proteomics

Metabolomics

Functional annotation / Sequence analysis

Genome annotation

Motif discovery

Regulatory module detection

Sections

Personal tools