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This folder contains information about the lecture, Oberseminar and Fachkurs which is held at the Humboldt University WS2011/2012.
File EST sequences
This file is a FASTA formatted sequence file. Use these sequences to assembly a cDNA with CAP3
File Work Sheet
Please follow this work sheet to complete the lecture on bioinformatics.
BLAST tutorial
The Basic Local Alignment Search Tool (BLAST) finds regions of local similarity between protein or nucleotide sequences. The program compares nucleotide or protein sequences to sequence in a database and calculates the statistical significance of the matches. This chapter first provides an introduction to BLAST and then describes the practical application of different BLAST programs based on the BLAST Quick Start mini-course ( In each example, emphasis is placed on practical step-by-step procedures, although relevant theory is also given where it affects the choice of BLAST program, parameters, and database.
File Lecture_slides_I
File Lecture_slides_II
File Lecture_slides_III
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